RasterSegmenter

Partitions a raster image into arbitrarily sized groups of cells from the input image based on intensity differences in the input raster image cells.

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Typical Uses

Medical image processing
Computer Vision
Object detection
Recognition Tasks

How does it work?

The RasterSegmenter accepts features with raster geometry. All other geometry types will be rejected. Each input raster feature will be processed independently.

The RasterSegmenter executes the user selected segmentation algorithm on the input raster geometry and outputs one raster for each segment of each input raster.

Each output segment is a raster feature containing cell values for the segmented area and Nodata or zero values for the remainder depending on the options selected.

It is recommended to use some kind of feature enhancing pre-processing step before using the RasterSegmenter, such as the RasterDiffuser or the RasterConvolver with a sharpening kernel.

Bands, Cell types, and Palettes

Rasters may have one band or multiple bands. The RasterSegmenter can handle up to 4 bands of the same datatype. Input rasters with an unexpected number of bands or with inconsistent types, will be rejected.

All raster cell types are accepted but are internally converted to Real64. If non-floating-point cell types are provided as input they will be converted to a floating-point cell type and a warning will be issued.

Alpha bands are preserved by removing them from the input raster prior to processing and appending them to the output raster after processing is complete. The output alpha band will be converted to 8 bit to match the bit depth of the RGB24 output bands.

Rasters may have no palette, one palette, or multiple palettes. For more information on raster structure, see Rasters (IFMERaster). The RasterSegmenter will resolve palettes on input rasters prior to processing. Input rasters with string palette values on cannot be resolved and will be rejected.

Selecting Raster Bands and Palettes

To select specific bands and/or palettes, use the RasterSelector prior to the RasterSegmenter.

Attributes

Attributes from the input features will be preserved in the output feature.

Segmentation Method

Watershed

Watershed segmentation partitions the image by considering the image as a function of its coordinates, where the intensity of the raster cells is the value.

A Gradient Magnitude filter is applied to the raster to enhance the borders of the image prior to running a Watershed Filter to produce an intensity based segmentation of the image.

The watershed algorithm does not produce a single image segmentation, but a hierarchy of segmentations. Different segmentations can be selected from this hierarchy by adjusting the maximum water level parameter.

Usage Notes

Choosing a Raster Transformer

FME has an extensive selection of transformers for working with raster data. They can be generally categorized as working with whole rasters, bands, cells or palettes, and those designed for workflow control or combining raster with vector data.

For information on raster geometry and properties, see Rasters (IFMERaster).

Raster Transformers

Working with Rasters

These transformers generally apply to whole rasters.

RasterCellOriginSetter	Sets the cell origin point within cells in a raster.
RasterConvolver	Applies a convolution filter (sometimes called a kernel or lens) to raster features and outputs the results.
RasterDiffuser	Enhances the features of a raster image. The RasterDiffuser enhances the borders, lines, and curves while reducing noise in the flat areas of the raster image.
RasterExpressionEvaluator	Evaluates expressions on each cell in a raster or pair of rasters, including algebraic operations and conditional statements.
RasterExtentsCoercer	Replaces the geometry of input raster features with a polygon covering either the extents of a raster or the extent of data within a raster.
RasterGCPExtractor	Extracts Ground Control Point (GCP) coordinate system and point values from a raster feature and exposes them as attributes.
RasterGCPSetter	Sets Ground Control Points (GCPs) on a raster, pairing cell positions with known coordinates.
RasterGeoreferencer	Georeferences a raster by either known corner coordinates or origin, cell size, and rotation.
RasterHillshader	Generates a grayscale shaded relief representation of terrain, based on elevation values.
RasterInterpretationCoercer	Alters the interpretation type of rasters, including all bands, and converts cell values if necessary.
RasterMosaicker	Merges multiple raster features into a single raster feature.
RasterPropertyExtractor	Extracts the geometry properties of a raster feature and exposes them as attributes.
RasterPyramider	Resamples rasters to multiple resolutions, based on either number of levels or dimensions of the smallest output raster.
RasterRegisterer	Transforms an image to minimize its difference with another.
RasterResampler	Resamples rasters, based on specified output dimensions, cell size in ground units, or percentage of original, and interpolates new cell values.
RasterRotationApplier	Rotates a raster feature according to its rotation angle property, interpolating new cell values, updating all other affected raster properties, and producing an output raster feature with a rotation angle of zero.
RasterSubsetter	Clips raster features using pixel bounds instead of ground coordinates, and optionally adds cells around the perimeter.
RasterTiler	Splits each input raster into a series of tiles by specifying either a tile size in cells/pixels or the number of tiles.
RasterToPolygonCoercer	Creates polygons from input raster features. One polygon is output for each contiguous area of pixels with the same value in the input raster.
WebMapTiler	Creates a series of image tiles that can be utilized by web mapping applications such as Bing™ Maps, Google Maps™, or Web Map Tile Service. This is done by resampling rasters to various different resolutions and then splitting them into tiles.

Working with Bands

These transformers generally apply to bands.

RasterBandAdder	Adds a new band to a raster feature.
RasterBandCombiner	Merges coincidental raster features into a single output raster feature, preserving and appending all bands.
RasterBandInterpretationCoercer	Alters the interpretation type of individual raster bands, converting cell values if necessary.
RasterBandKeeper	Removes all unselected bands from a raster feature.
RasterBandMinMaxExtractor	Extracts the minimum and maximum band values, palette keys, and palette values from a raster feature, and adds them to a list attribute.
RasterBandNameSetter	Sets the band name of selected bands on a raster, making raster contents simpler to understand compared to band numbers.
RasterBandNodataRemover	Removes the existing Nodata identifier from selected bands of a raster feature. Any values previously equal to the Nodata value are considered valid data.
RasterBandNodataSetter	Sets a new Nodata value on selected bands of a raster feature.
RasterBandOrderer	Specifies the required order of bands in a raster. Bands are reordered according to the input band indices.
RasterBandPropertyExtractor	Extracts the band and palette properties of a raster feature and exposes them as attributes.
RasterBandRemover	Removes any selected bands from a raster feature.
RasterBandSeparator	Separates bands or unique band and palette combinations, and outputs either individual raster features or a single new raster feature containing all combinations.
RasterStatisticsCalculator	Calculates statistics on raster bands and adds the results as attributes.

Working with Cells

These transformers generally apply to individual cells.

RasterAspectCalculator	Calculates the aspect (direction of slope) for each cell of a raster. Aspect is measured in degrees from 0 to 360, clockwise from north.
RasterCellCoercer	Creates individual points or polygons for each cell in a raster, optionally extracting band values as z coordinates or attributes.
RasterCellValueCalculator	Evaluates basic arithmetic , minimum, maximum or average operations on the cell values of a pair of rasters.
RasterCellValueReplacer	Replaces a range of band values in a raster with a new single value.
RasterCellValueRounder	Rounds off raster cell values.
RasterSegmenter	Partitions a raster image into arbitrarily sized groups of cells from the input image based on intensity differences in the input raster image cells.
RasterSingularCellValueCalculator	Performs basic arithmetic operations on the cell values of a raster against a numeric value.
RasterSlopeCalculator	Calculates the slope (maximum rate of change in z) for each cell of a raster.

Working with Palettes

These transformers generally apply to palettes.

RasterPaletteAdder	Creates a palette from an attribute, and adds this palette to all selected bands on a raster.
RasterPaletteExtractor	Creates a string representation of an existing palette on a raster and saves it to an attribute.
RasterPaletteGenerator	Generates a palette out of the selected band(s) of a raster. The output raster will have the selected band(s) replaced by a new band with a palette.
RasterPaletteInterpretationCoercer	Alters the interpretation type of raster palettes.
RasterPaletteNodataSetter	Identifies the palette key that matches a raster band’s Nodata value, and sets a value on it.
RasterPaletteRemover	Removes selected palette(s) from raster features.
RasterPaletteResolver	Resolves the palette(s) on a raster by replacing cell values with their corresponding palette values. Palette values with multiple components, such as RGB, are broken down and the individual values assigned to multiple, newly-added bands.

Workflow Control

These transformers generally control the flow of features in a workspace.

RasterCheckpointer	Forces accumulated raster operations to be processed, saving the state to disk and releasing resources to tune performance or assist with memory limitations.
RasterConsumer	Reads raster features for testing purposes, including any accumulated raster operations. No additional operations are performed, and nothing is done with the features.
RasterExtractor	Serializes the geometry of a raster feature into a Blob attribute, encoding the contents according to a choice of common binary raster formats.
RasterNumericCreator	Creates a numeric raster of specified size and resolution, with default cell values.
RasterReplacer	Decodes a binary attribute containing encoded rasters stored as Blobs, replacing the feature’s geometry with the decoded raster.
RasterRGBCreator	Creates a color raster feature of specified size, resolution, and interpretation type, with default cell values.
RasterSelector	Selects specific bands and palettes of a raster for subsequent transformer operations.

Vectors and Rasters

These transformers generally involve using rasters and vector data together.

ImageRasterizer	Creates a raster representation of vector or point cloud input features, using the fme_color attribute over a solid background fill for vector features. Point clouds may be rendered using their color or intensity components.
NumericRasterizer	Creates a numeric raster representation of vector or point cloud input features, where cell values are taken from the z coordinates of the input features and overlaid on a uniform background.
MapnikRasterizer	Generates a raster from input vector and raster features, with fine control over symbolization and labeling, using the Mapnik toolkit.
PointCloudOnRasterComponentSetter	Sets point cloud component values by overlaying a point cloud on a raster. The component values for each point are interpolated from band values at the point location.
PointOnRasterValueExtractor	Extracts the band and palette values from a raster at the location of one or more input points and sets them as attributes on the feature.
RasterDEMGenerator	Produces a raster digital elevation model (DEM) by uniformly sampling a Delaunay triangulation generated from input points and breaklines.
VectorOnRasterOverlayer	Rasterizes vector or point cloud features onto an existing raster. For vector features the fme_color attribute sets pixel color, and point clouds may be rendered using their color or intensity components.

Configuration

Input Ports

Output Ports

Parameters

Watershed

Water Level Percentage

Maximum Height

Floating-point percentage between 0.0 and 100.0.

Sets the relative depth of metaphorical flooding of the raster.

This parameter can be used to control the level of segmentation of the image. Usually, greater values of this parameter lead to a less segmented raster. The values of interest tend to be lower than 40. The default of 10 usually results in a fairly granular segmentation. Consider increasing if the scale level of the output is too segmented, and decreasing it otherwise.

Water Level Maximum must be greater than Water Level Minimum.

Required

Minimum Height

Floating-point percentage between 0.0 and 100.0.

Sets the minimum height values, relative to the minimum and maximum intensity values in the image.

It’s used to remove more shallow areas of the image that are of less interest. Greater values set a higher minimum, which discards more noise. Usually, useful values of this parameter are around one hundredth of the Maximum Water Level. (That is, if the Maximum Water level is set to 10, 0.1 is a good starting point for this parameter). The default is set to 0.1 which should clear some of the noise without affecting the prominent features of the image, but it depends heavily on the image.

Water Level Maximum must be greater than Water Level Minimum.

Required

Gradient Magnitude Filter

Controls how the Gradient Magnitude filter is applied.

Only makes a difference with multi band rasters.

Precise (Recommended): (Principal Components), Use the largest two singular values of the Singular Value Decomposition of the partial derivative. This is also the default value. This setting is slower but usually gives intuitively better results.

Fast: (Rooted Weighted Sum of Derivatives). Much faster and is parallelized (works well on bigger rasters), but not as robust, it may result in a less precise segmentation. Try this if the other method is too slow.

Required

Editing Transformer Parameters

Transformer parameters can be set by directly entering values, using expressions, or referencing other elements in the workspace such as attribute values or user parameters. Various editors and context menus are available to assist. To see what is available, click beside the applicable parameter.

How to Set Parameter Values

Defining Values

There are several ways to define a value for use in a Transformer. The simplest is to simply type in a value or string, which can include functions of various types such as attribute references, math and string functions, and workspace parameters.

Using the Text Editor

The Text Editor provides a convenient way to construct text strings (including regular expressions) from various data sources, such as attributes, parameters, and constants, where the result is used directly inside a parameter.

Text Editor

Using the Arithmetic Editor

The Arithmetic Editor provides a convenient way to construct math expressions from various data sources, such as attributes, parameters, and feature functions, where the result is used directly inside a parameter.

Arithmetic Editor

Conditional Values

Set values depending on one or more test conditions that either pass or fail.

Parameter Condition Definition Dialog

Content

Expressions and strings can include a number of functions, characters, parameters, and more.

When setting values - whether entered directly in a parameter or constructed using one of the editors - strings and expressions containing String, Math, Date/Time or FME Feature Functions will have those functions evaluated. Therefore, the names of these functions (in the form @<function_name>) should not be used as literal string values.

Content Types

String Functions	These functions manipulate and format strings.
Special Characters	A set of control characters is available in the Text Editor.
Math Functions	Math functions are available in both editors.
Date/Time Functions	Date and time functions are available in the Text Editor.
Math Operators	These operators are available in the Arithmetic Editor.
FME Feature Functions	These return primarily feature-specific values.
FME Parameters	FME and workspace-specific parameters may be used.
Creating and Modifying User Parameters	Create your own editable parameters.

Dialog Options - Tables

Table Tools

Transformers with table-style parameters have additional tools for populating and manipulating values.

Row Reordering

Enabled once you have clicked on a row item. Choices include:

Add a row
Remove a row
Move current row up one
Move current row down one
Move current row to top
Move current row to bottom

Cut, Copy, and Paste

Enabled once you have clicked on a row item. Choices include:

Cut a row - delete and copy to clipboard
Copy a row to the clipboard
Paste a row from the clipboard

Cut, copy, and paste may be used within a transformer, or between transformers.

Filter

Start typing a string, and the matrix will only display rows matching those characters. Searches all columns. This only affects the display of attributes within the transformer - it does not alter which attributes are output.

Import

Import populates the table with a set of new attributes read from a dataset. Specific application varies between transformers.

Reset/Refresh

Generally resets the table to its initial state, and may provide additional options to remove invalid entries. Behavior varies between transformers.

Note: Not all tools are available in all transformers.

For more information, see Transformer Parameter Menu Options.

Reference

Processing Behavior	Feature-Based
Feature Holding	No
Dependencies	None
Aliases
History

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